STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0965Formamidase; PFAM: Acetamidase/Formamidase. (388 aa)    
Predicted Functional Partners:
Swit_0987
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
 
  
 0.927
Swit_4178
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
 
  
 0.927
Swit_0832
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
 
  
 0.926
Swit_2469
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
    
 0.908
Swit_0418
Glutamate dehydrogenase (NADP); PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
    
 0.906
Swit_1330
Glutamate dehydrogenase (NADP); PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
    
 0.906
Swit_1475
PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit.
     
 0.905
Swit_4604
PFAM: NAD-glutamate dehydrogenase.
     
 0.905
Swit_1473
TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region.
    
 0.904
Swit_1667
PFAM: glutamine synthetase, catalytic region.
    
 0.904
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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