Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0968Hypothetical protein. (162 aa)    
Predicted Functional Partners:
Swit_0966
PFAM: Rieske [2Fe-2S] domain protein.
 
     0.820
Swit_0969
PFAM: Rieske [2Fe-2S] domain protein.
     
 0.783
Swit_0967
Hypothetical protein.
       0.781
Swit_0965
Formamidase; PFAM: Acetamidase/Formamidase.
       0.637
Swit_3662
Hypothetical protein.
  
     0.519
Swit_1111
Hypothetical protein.
  
     0.513
Swit_3710
PFAM: outer membrane efflux protein.
 
     0.496
Swit_1804
PFAM: Endonuclease/exonuclease/phosphatase.
  
     0.480
Swit_0962
PFAM: Rieske [2Fe-2S] domain protein.
 
     0.474
Swit_4492
PFAM: polysaccharide deacetylase.
 
     0.460
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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