Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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Score
Swit_0980Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein, AraC type. (316 aa)    
Predicted Functional Partners:
Swit_0979
PFAM: OsmC family protein.
       0.581
Swit_4347
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type.
  
     0.548
Swit_0326
Transcriptional regulator, AraC family with amidase-like domain; PFAM: helix-turn-helix- domain containing protein, AraC type.
 
 
 0.495
Swit_1911
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type.
  
     0.478
Swit_0747
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR.
  
  
 0.476
Swit_3885
PFAM: flavin-containing monooxygenase FMO.
  
   
 0.470
Swit_1879
PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase.
  
     0.451
Swit_0981
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
       0.449
Swit_1540
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type.
  
     0.446
Swit_1880
Indolepyruvate ferredoxin oxidoreductase; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding.
  
     0.440
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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