Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
Swit_0995PFAM: PRC-barrel domain protein. (132 aa)    
Predicted Functional Partners:
Swit_0994
PFAM: alpha/beta hydrolase fold.
       0.565
Swit_0996
PFAM: short-chain dehydrogenase/reductase SDR; KR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.511
Swit_0997
PFAM: cytochrome P450.
       0.511
Swit_0073
Response regulator receiver protein.
  
    0.491
Swit_0998
PFAM: ferredoxin.
       0.459
Swit_0999
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
       0.448
Swit_3435
PFAM: response regulator receiver.
  
    0.439
Swit_3431
PFAM: Patatin.
 
     0.431
Swit_1263
Rod binding-like protein.
  
    0.411
Swit_3925
PFAM: response regulator receiver.
  
    0.402
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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