Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_1001PFAM: Pyrrolo-quinoline quinone. (698 aa)    
Predicted Functional Partners:
Swit_0691
Hypothetical protein.
 
 
 0.954
Swit_1798
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
  
 
 0.929
Swit_4160
PFAM: Pyrrolo-quinoline quinone; cytochrome c, class I.
 
 
0.909
Swit_1440
PFAM: cytochrome c, class I; glucose sorbosone dehydrogenase.
  
 
 0.903
Swit_0721
PFAM: Pyrrolo-quinoline quinone.
  
 
 0.894
Swit_2227
PFAM: Pyrrolo-quinoline quinone.
  
 
 0.894
Swit_0509
Hypothetical protein.
  
 
 0.853
Swit_1527
Hypothetical protein.
  
 
 0.853
Swit_1791
Hypothetical protein.
  
 
 0.853
Swit_4366
PFAM: cytochrome c, class I.
  
 
 0.853
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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