Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Swit_1017Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR. (216 aa)    
Predicted Functional Partners:
Swit_1016
PFAM: AMP-dependent synthetase and ligase.
     
 0.511
Swit_2571
PFAM: bifunctional deaminase-reductase domain protein.
 
   
 0.501
Swit_1015
Hypothetical protein.
     
 0.496
Swit_1014
PFAM: Enoyl-CoA hydratase/isomerase.
  
  
 0.478
Swit_1013
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.
     
 0.473
Swit_0489
PFAM: bifunctional deaminase-reductase domain protein.
 
   
 0.467
Swit_0374
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR.
  
   
 0.419
Swit_1410
PFAM: GCN5-related N-acetyltransferase.
 
   
 0.416
Swit_0031
Hypothetical protein.
  
     0.412
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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