Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swit_1018PFAM: Enoyl-CoA hydratase/isomerase. (267 aa)    
Predicted Functional Partners:
Swit_1612
PFAM: Enoyl-CoA hydratase/isomerase.
 
   0.847
Swit_0385
PFAM: Enoyl-CoA hydratase/isomerase.
 
   0.839
Swit_0344
PFAM: Enoyl-CoA hydratase/isomerase.
 
   0.837
Swit_1019
PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
 
 0.836
Swit_0321
1,4-Dihydroxy-2-naphthoate synthase; PFAM: Enoyl-CoA hydratase/isomerase.
 
   0.833
Swit_2071
Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit-like protein.
 
 0.815
Swit_3296
Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit-like protein.
 
 0.813
Swit_3628
PFAM: acyl-CoA dehydrogenase domain protein.
 
 0.797
Swit_2021
PFAM: Enoyl-CoA hydratase/isomerase.
 
   0.795
Swit_3321
Acetyl-CoA acetyltransferase-like protein.
 
 0.780
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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