STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_1024Limonene-1,2-epoxide hydrolase; PFAM: protein of unknown function DUF1486; Limonene-1,2-epoxide hydrolase. (119 aa)    
Predicted Functional Partners:
Swit_1023
PFAM: major facilitator superfamily MFS_1.
       0.773
Swit_1733
Metal-dependent hydrolase-like protein.
  
     0.683
Swit_1025
Hypothetical protein.
 
     0.671
Swit_2094
PFAM: alpha/beta hydrolase fold.
  
   
 0.662
Swit_1015
Hypothetical protein.
  
     0.614
Swit_0358
Metal-dependent hydrolase-like protein.
  
     0.589
Swit_1041
Hypothetical protein.
  
     0.567
Swit_3295
PFAM: nuclear transport factor 2.
 
     0.547
Swit_3408
Hypothetical protein.
  
     0.538
Swit_1744
PFAM: alpha/beta hydrolase fold.
  
   
 0.530
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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