Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swit_1053Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR. (255 aa)    
Predicted Functional Partners:
Swit_3983
PFAM: Antibiotic biosynthesis monooxygenase.
 
     0.644
Swit_1994
Hypothetical protein.
  
   
 0.637
Swit_2273
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR.
  
     0.595
Swit_1308
Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase-like protein.
 
     0.588
Swit_2344
Hypothetical protein.
  
     0.585
Swit_1051
Arginase; TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; Belongs to the arginase family.
  
  
 0.581
Swit_1307
Hypothetical protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.577
Swit_1052
PFAM: ornithine cyclodeaminase/mu-crystallin.
       0.568
Swit_2018
Hypothetical protein.
  
   
 0.564
Swit_2179
Hypothetical protein.
  
    0.554
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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