STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_1086Peptidase M24; PFAM: creatinase; peptidase M24. (601 aa)    
Predicted Functional Partners:
Swit_1089
Porphobilinogen synthase; PFAM: delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
  
  
 0.588
Swit_1085
PFAM: SCP-like extracellular; SMART: Allergen V5/Tpx-1 family protein.
       0.557
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
 
 0.551
Swit_1423
Oligopeptidase B; PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller.
     
 0.548
Swit_4845
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase.
 
 0.517
Swit_1087
Carbonic anhydrase/acetyltransferase isoleucine patch superfamily-like protein.
  
  
 0.501
nadE
NAD(+) synthase (glutamine-hydrolyzing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
 0.490
Swit_3236
PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
     
 0.482
Swit_1088
PFAM: GCN5-related N-acetyltransferase.
       0.473
Swit_1090
PFAM: diacylglycerol kinase, catalytic region.
  
   0.450
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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