STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_1111Hypothetical protein. (351 aa)    
Predicted Functional Partners:
Swit_3799
Hypothetical protein.
 
     0.775
Swit_2896
Hypothetical protein.
  
     0.761
Swit_1934
Hypothetical protein.
  
     0.754
Swit_0796
Hypothetical protein.
 
     0.745
Swit_0026
Hypothetical protein.
  
     0.703
Swit_0689
Hypothetical protein.
  
  
 0.670
Swit_0794
PFAM: Tetratricopeptide TPR_4.
 
     0.670
Swit_0059
Hypothetical protein.
  
     0.666
Swit_4074
Hypothetical protein.
 
     0.660
Swit_3918
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
  
     0.654
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.