STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_1124PFAM: glutaredoxin. (247 aa)    
Predicted Functional Partners:
Swit_1504
Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
  
 0.915
Swit_1123
Transcriptional regulator, MerR family; PFAM: regulatory protein, MerR; Transcription regulator MerR, DNA binding.
 
   
 0.825
Swit_1945
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein, Crp.
   
 
 0.687
Swit_0978
TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold.
  
  
 0.659
rpsK
SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
  
 0.659
Swit_2673
PFAM: protein of unknown function DUF179; Belongs to the UPF0301 (AlgH) family.
    
 0.657
Swit_4363
PFAM: methylamine dehydrogenase heavy subunit.
  
  
 0.656
rpmD
PFAM: ribosomal protein L30.
   
  
 0.654
Swit_0268
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR; response regulator receiver.
     
 0.643
Swit_4239
PFAM: regulatory protein, LuxR.
     
 0.643
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.