Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_1187PFAM: Methyltransferase type 12. (236 aa)    
Predicted Functional Partners:
Swit_1188
PFAM: monooxygenase, FAD-binding.
 
  
 0.957
Swit_1186
PFAM: chalcone and stilbene synthase domain protein.
 
  
 0.954
Swit_2449
TIGRFAM: rpsU-divergently transcribed protein; PFAM: COQ9 domain protein.
   
 0.805
coq7
Ubiquinone biosynthesis protein COQ7; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.
  
 0.767
Swit_3536
Hypothetical protein.
  
     0.598
Swit_4009
PFAM: glycosyl transferase, group 1; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
  
  
 0.571
Swit_0827
PFAM: NADH:flavin oxidoreductase/NADH oxidase; monooxygenase, FAD-binding.
  
 0.565
Swit_3277
Hypothetical protein.
    
 0.564
Swit_3348
Uncharacterized protein involved in ubiquinone biosynthesis-like protein.
    
 0.564
Swit_0456
PFAM: monooxygenase, FAD-binding; tryptophan halogenase.
  
 0.559
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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