Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_1192Hypothetical protein. (135 aa)    
Predicted Functional Partners:
Swit_1193
PFAM: Di-haem cytochrome c peroxidase.
       0.781
Swit_1194
PFAM: bifunctional deaminase-reductase domain protein.
       0.668
Swit_1191
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
       0.567
Swit_3058
TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain.
     
  0.500
Swit_3352
TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain.
     
  0.500
Swit_3865
TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
     
  0.500
Swit_1189
PFAM: Activator of Hsp90 ATPase 1 family protein.
       0.414
Swit_1190
Transcriptional regulator, ArsR family; PFAM: regulatory protein, ArsR.
       0.414
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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