Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_1193PFAM: Di-haem cytochrome c peroxidase. (333 aa)    
Predicted Functional Partners:
Swit_1192
Hypothetical protein.
       0.781
Swit_1194
PFAM: bifunctional deaminase-reductase domain protein.
  
    0.688
Swit_3251
Amine dehydrogenase; Methylamine dehydrogenase carries out the oxidation of methylamine. Electrons are passed from methylamine dehydrogenase to amicyanin; Belongs to the aromatic amine dehydrogenase light chain family.
   
   0.681
Swit_4365
Amine dehydrogenase; Methylamine dehydrogenase carries out the oxidation of methylamine. Electrons are passed from methylamine dehydrogenase to amicyanin; Belongs to the aromatic amine dehydrogenase light chain family.
   
   0.681
Swit_1191
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
   
 0.662
Swit_1800
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase, mono-heme subunit/FixO.
 
  
 0.446
Swit_0044
PFAM: protein of unknown function DUF344.
 
  
 0.423
Swit_1189
PFAM: Activator of Hsp90 ATPase 1 family protein.
       0.414
Swit_1190
Transcriptional regulator, ArsR family; PFAM: regulatory protein, ArsR.
       0.414
Swit_0690
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein.
  
 
 0.412
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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