STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_1203Agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase; Belongs to the agmatine deiminase family. (332 aa)    
Predicted Functional Partners:
Swit_1204
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
 
 0.999
Swit_1695
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
 
  
 0.752
Swit_1205
PFAM: Antibiotic biosynthesis monooxygenase.
       0.732
Swit_1202
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility C-terminal domain.
       0.579
Swit_0029
PFAM: peptidase M28.
       0.529
Swit_1201
PFAM: UDP-glucose/GDP-mannose dehydrogenase; 6-phosphogluconate dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase-like; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
       0.525
Swit_4664
PFAM: Orn/DAP/Arg decarboxylase 2; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
 
   
 0.482
Swit_1949
Spermidine synthase-like protein.
     
 0.474
Swit_2469
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
 
  
 0.462
Swit_0557
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
 
  
 0.455
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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