Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_1245PFAM: alpha/beta hydrolase fold. (290 aa)    
Predicted Functional Partners:
Swit_1244
PFAM: glycosyl transferase, group 1.
  
  
 0.877
Swit_1246
PFAM: protein of unknown function UPF0061.
     
 0.768
Swit_1243
PFAM: 2-nitropropane dioxygenase, NPD.
  
    0.741
Swit_2821
PFAM: Ankyrin.
  
 0.506
Swit_3098
PFAM: Ankyrin.
  
 0.506
Swit_0529
Succinylglutamic semialdehyde dehydrogenase; Catalyzes the NAD-dependent reduction of succinylglutamate semialdehyde into succinylglutamate.
     
 0.485
Swit_0317
PFAM: acyl-CoA dehydrogenase domain protein.
  
 0.447
Swit_0318
PFAM: acyl-CoA dehydrogenase domain protein.
  
 0.447
Swit_0323
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.
  
 0.447
Swit_0375
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.
  
 0.447
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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