Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_1303PFAM: thioesterase superfamily protein. (149 aa)    
Predicted Functional Partners:
Swit_1302
PFAM: AFG1-family ATPase.
       0.870
Swit_1304
TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
  
    0.857
Swit_3894
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR.
 
   
 0.752
Swit_2153
Hypothetical protein.
 
     0.735
Swit_2116
Hypothetical protein.
  
     0.683
Swit_2783
Hypothetical protein.
  
     0.682
Swit_2336
Hypothetical protein.
 
    0.638
Swit_3192
PFAM: Tetratricopeptide TPR_2 repeat protein.
  
     0.602
Swit_1305
PFAM: polysaccharide biosynthesis protein.
 
     0.590
Swit_2230
PFAM: phosphate-selective porin O and P.
  
     0.530
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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