Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_1485Uncharacterized protein. (490 aa)    
Predicted Functional Partners:
Swit_1484
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
       0.773
Swit_1486
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
       0.773
Swit_0713
Hypothetical protein.
  
     0.673
Swit_0424
PFAM: glutathione-dependent formaldehyde-activating, GFA.
  
     0.602
Swit_1782
PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase, N-terminal domain protein.
  
     0.515
Swit_0965
Formamidase; PFAM: Acetamidase/Formamidase.
 
     0.445
Swit_1483
Hypothetical protein.
       0.429
Swit_1482
Hypothetical protein.
       0.415
Swit_3101
PFAM: polysaccharide deacetylase.
  
     0.410
Swit_0928
PFAM: polysaccharide deacetylase.
  
     0.400
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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