Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Swit_1503PFAM: Autotransporter beta- domain protein. (1069 aa)    
Predicted Functional Partners:
Swit_1502
TonB-dependent receptor, plug; PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug.
 
     0.827
Swit_1810
PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug.
 
 
 
 0.797
Swit_2614
Hypothetical protein.
  
     0.752
Swit_1500
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.644
Swit_1501
anti-FecI sigma factor, FecR; PFAM: FecR protein.
 
     0.620
Swit_3861
PFAM: TonB-dependent receptor, plug.
 
   
 0.613
Swit_2336
Hypothetical protein.
  
     0.585
Swit_2787
PFAM: Sel1 domain protein repeat-containing protein.
 
     0.568
Swit_3837
Putative transmembrane anti-sigma factor.
  
     0.565
Swit_2353
Hypothetical protein.
 
   
 0.554
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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