STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_1522PFAM: Resolvase, N-terminal domain; Recombinase. (568 aa)    
Predicted Functional Partners:
Swit_1523
Hypothetical protein.
 
     0.954
Swit_1524
Hypothetical protein.
 
   
 0.943
Swit_1578
PFAM: DNA methylase N-4/N-6 domain protein; SMART: ParB domain protein nuclease; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.794
Swit_2193
PFAM: phage terminase GpA.
 
  
 0.585
Swit_2191
TIGRFAM: phage portal protein, lambda family; PFAM: phage portal protein, lambda.
 
    0.494
Swit_2196
TIGRFAM: phage/plasmid primase, P4 family; PFAM: Phage/plasmid primase, P4-like; Bifunctional DNA primase/polymerase-like.
 
  
 0.447
Swit_2181
Hypothetical protein.
  
     0.440
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.