Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_1533SMART: helix-turn-helix- domain containing protein, AraC type. (330 aa)    
Predicted Functional Partners:
Swit_1532
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
 
   
 0.624
Swit_1531
Rieske (2Fe-2S) domain protein; PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein.
 
   
 0.588
Swit_1529
PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
 
   
 0.583
Swit_1882
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR.
  
  
 0.542
Swit_3885
PFAM: flavin-containing monooxygenase FMO.
  
   
 0.542
Swit_1881
PFAM: cyclase family protein.
 
     0.518
Swit_1530
PFAM: AMP-dependent synthetase and ligase.
     
 0.514
Swit_0747
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR.
  
  
 0.507
Swit_1879
PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase.
  
     0.498
Swit_1880
Indolepyruvate ferredoxin oxidoreductase; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding.
  
     0.461
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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