STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_1535Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family. (301 aa)    
Predicted Functional Partners:
Swit_3412
Dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein; Belongs to the UPF0255 family.
 
     0.625
Swit_1536
PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal domain.
  
    0.603
Swit_3417
PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase.
 
   
 0.510
Swit_1684
PFAM: monooxygenase, FAD-binding.
 
   
 0.499
Swit_1538
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
 
   
 0.479
Swit_3414
PFAM: cyclase family protein.
 
     0.477
Swit_0153
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR.
 
 
 
 0.474
Swit_3637
PFAM: major facilitator superfamily MFS_1.
 
  
 0.471
Swit_4626
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR.
 
 
 
 0.469
Swit_1561
PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase.
 
   
 0.452
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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