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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
Swit_1541Vanillate monooxygenase; PFAM: Rieske [2Fe-2S] domain protein. (423 aa)    
Predicted Functional Partners:
Swit_2034
PFAM: Rieske [2Fe-2S] domain protein.
  
     0.774
Swit_1540
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type.
       0.773
Swit_1542
PFAM: Rieske [2Fe-2S] domain protein.
 
    
0.589
Swit_4281
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
 
 
 0.553
Swit_1539
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
       0.538
Swit_3265
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein.
 
  
 0.514
Swit_0743
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
  
 
 0.495
Swit_0889
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
  
 
 0.495
Swit_0895
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
  
 
 0.495
Swit_1532
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
  
 
 0.495
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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