Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_1546PFAM: alpha/beta hydrolase fold. (285 aa)    
Predicted Functional Partners:
Swit_0886
PFAM: alpha/beta hydrolase fold.
  
     0.769
Swit_0910
PFAM: alpha/beta hydrolase fold.
  
     0.769
Swit_3055
PFAM: alpha/beta hydrolase fold.
  
     0.765
Swit_1445
PFAM: alpha/beta hydrolase fold.
  
   
 0.755
Swit_0888
PFAM: alpha/beta hydrolase fold.
  
     0.731
Swit_0937
Prolyl aminopeptidase; PFAM: alpha/beta hydrolase fold.
  
   
 0.639
Swit_1653
PFAM: alpha/beta hydrolase fold.
  
     0.639
Swit_1545
PFAM: aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.609
Swit_3309
PFAM: alpha/beta hydrolase fold.
  
     0.599
Swit_3311
PFAM: alpha/beta hydrolase fold.
  
     0.533
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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