Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_1552PFAM: Rieske [2Fe-2S] domain protein. (367 aa)    
Predicted Functional Partners:
Swit_1551
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR.
       0.550
Swit_3265
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein.
 
  
 0.529
Swit_0743
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
  
 
 0.495
Swit_0889
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
  
 
 0.495
Swit_0895
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
  
 
 0.495
Swit_1532
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
  
 
 0.495
Swit_1757
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
  
 
 0.495
Swit_1875
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
  
 
 0.495
Swit_2635
2-chlorobenzoate 1,2-dioxygenase; PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
  
 
 0.495
Swit_3057
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
  
 
 0.495
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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