Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swit_1561PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase. (377 aa)    
Predicted Functional Partners:
Swit_3412
Dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein; Belongs to the UPF0255 family.
 
     0.759
Swit_2311
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
 
   
 0.662
Swit_1564
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
 
   
 0.649
Swit_1555
Hypothetical protein.
 
  
 0.645
Swit_3418
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
 
   
 0.638
Swit_1562
PFAM: major facilitator superfamily MFS_1.
     
 0.630
Swit_1563
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
 
   
 0.629
Swit_1438
PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase.
  
     0.628
Swit_1680
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
 
   
 0.625
Swit_1682
Hypothetical protein.
 
  
 0.624
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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