STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_1563PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase. (340 aa)    
Predicted Functional Partners:
Swit_3412
Dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein; Belongs to the UPF0255 family.
 
     0.777
Swit_1684
PFAM: monooxygenase, FAD-binding.
 
   
 0.754
Swit_1564
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
 
    
0.716
Swit_1682
Hypothetical protein.
 
    0.701
Swit_3417
PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase.
 
   
 0.700
Swit_1555
Hypothetical protein.
 
    0.699
Swit_3026
PFAM: Cupin 2, conserved barrel domain protein.
 
    0.680
Swit_0739
Hypothetical protein.
  
     0.669
Swit_4185
Hypothetical protein.
  
     0.661
Swit_4186
Hypothetical protein.
 
     0.646
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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