Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Swit_1586Na+/melibiose symporter and related transporter-like protein. (453 aa)    
Predicted Functional Partners:
Swit_1587
PFAM: aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  
 0.795
Swit_4843
PFAM: protein of unknown function DUF1365.
 
  
 0.692
Swit_1585
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type.
     
 0.566
Swit_1588
L-threonine ammonia-lyase; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit.
     
 0.506
Swit_1584
Hypothetical protein.
 
     0.483
Swit_4842
PFAM: amine oxidase; FAD dependent oxidoreductase.
 
   
 0.426
Swit_3976
PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding.
  
  
 0.406
Swit_4597
Isoquinoline 1-oxidoreductase; PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding.
  
  
 0.406
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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