STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_1622PFAM: Acetamidase/Formamidase. (318 aa)    
Predicted Functional Partners:
Swit_1621
PFAM: Amidase; Belongs to the amidase family.
  
  
 0.772
Swit_1619
PFAM: Carboxylesterase, type B.
     
 0.749
Swit_1620
PFAM: Cupin 2, conserved barrel domain protein.
       0.743
Swit_0986
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type.
      0.589
zwf
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
  
    0.508
Swit_0928
PFAM: polysaccharide deacetylase.
 
    0.442
Swit_1616
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
 
    0.441
Swit_4187
PFAM: Amidase; Belongs to the amidase family.
 
  
 0.425
Swit_1618
PFAM: aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
    0.422
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
Server load: medium (66%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.