Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Swit_1629PFAM: Stress responsive alpha-beta barrel domain protein. (135 aa)    
Predicted Functional Partners:
Swit_1628
PFAM: Xylose isomerase domain protein TIM barrel.
 
     0.815
Swit_1895
Hypothetical protein.
 
     0.771
Swit_1636
PFAM: major facilitator superfamily MFS_1.
 
     0.766
Swit_1633
Hypothetical protein.
 
     0.761
Swit_1630
PFAM: protein of unknown function DUF1080.
 
     0.736
Swit_1632
PFAM: glucose-methanol-choline oxidoreductase.
 
     0.696
Swit_1894
PFAM: glucose-methanol-choline oxidoreductase.
 
     0.696
Swit_4695
PFAM: lipolytic enzyme, G-D-S-L family.
  
     0.661
Swit_1634
PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain.
 
     0.628
Swit_1892
PFAM: Xylose isomerase domain protein TIM barrel.
  
     0.595
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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