Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_1636PFAM: major facilitator superfamily MFS_1. (480 aa)    
Predicted Functional Partners:
Swit_1630
PFAM: protein of unknown function DUF1080.
 
     0.773
Swit_1629
PFAM: Stress responsive alpha-beta barrel domain protein.
 
     0.766
Swit_1895
Hypothetical protein.
 
   
 0.751
Swit_1896
PFAM: Xylose isomerase domain protein TIM barrel.
 
   
 0.734
Swit_1894
PFAM: glucose-methanol-choline oxidoreductase.
 
     0.704
Swit_1632
PFAM: glucose-methanol-choline oxidoreductase.
 
     0.700
Swit_4695
PFAM: lipolytic enzyme, G-D-S-L family.
 
     0.683
Swit_1628
PFAM: Xylose isomerase domain protein TIM barrel.
 
   
 0.677
Swit_1634
PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain.
 
  
 0.673
Swit_1892
PFAM: Xylose isomerase domain protein TIM barrel.
 
   
 0.636
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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