Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_1675PFAM: luciferase family protein. (362 aa)    
Predicted Functional Partners:
Swit_1444
PFAM: luciferase family protein.
  
     0.772
Swit_2098
PFAM: luciferase family protein.
  
     0.738
Swit_4272
PFAM: luciferase family protein.
  
     0.542
Swit_1674
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; Helix-turn-helix, type 11 domain protein.
     
 0.511
Swit_4260
PFAM: luciferase family protein.
  
     0.493
Swit_2511
PFAM: binding-protein-dependent transport systems inner membrane component.
 
  
 0.458
Swit_0815
PFAM: luciferase family protein.
  
     0.444
Swit_2508
TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein, family 3.
 
  
 0.444
Swit_1168
Pyrimidine oxygenase; Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductase-like protein.
  
     0.434
Swit_4216
PFAM: luciferase family protein.
  
     0.433
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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