Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swit_1722PFAM: TonB-dependent receptor; TonB-dependent receptor, plug. (767 aa)    
Predicted Functional Partners:
Swit_3032
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.709
Swit_3766
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.644
Swit_1721
Transcriptional regulator, XRE family with cupin sensor; PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein.
       0.639
Swit_1720
PFAM: Cupin 2, conserved barrel domain protein.
       0.618
Swit_4318
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.606
Swit_1868
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.601
Swit_2291
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
   
 0.574
Swit_1719
5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein.
       0.556
Swit_0540
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
  
   
 0.537
Swit_3144
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.517
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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