Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
Swit_1733Metal-dependent hydrolase-like protein. (268 aa)    
Predicted Functional Partners:
Swit_1735
PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3.
 
     0.708
Swit_1024
Limonene-1,2-epoxide hydrolase; PFAM: protein of unknown function DUF1486; Limonene-1,2-epoxide hydrolase.
  
     0.683
Swit_1734
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
       0.661
Swit_1737
Hypothetical protein.
       0.583
Swit_1736
PFAM: aldo/keto reductase.
       0.571
Swit_4132
PFAM: FAD dependent oxidoreductase.
 
     0.528
Swit_1738
PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3.
 
     0.514
Swit_3295
PFAM: nuclear transport factor 2.
  
     0.447
Swit_3327
Hypothetical protein.
  
     0.444
Swit_4254
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type.
 
     0.436
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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