STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_1735PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3. (587 aa)    
Predicted Functional Partners:
Swit_1734
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
       0.773
Swit_1820
Dihydroorotase; PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3.
  
     0.752
Swit_1733
Metal-dependent hydrolase-like protein.
 
     0.709
Swit_1736
PFAM: aldo/keto reductase.
       0.664
Swit_1737
Hypothetical protein.
       0.664
Swit_1738
PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3.
 
    
0.534
Swit_1024
Limonene-1,2-epoxide hydrolase; PFAM: protein of unknown function DUF1486; Limonene-1,2-epoxide hydrolase.
 
     0.451
Swit_2262
Hypothetical protein.
  
     0.426
Swit_1742
Hypothetical protein.
 
     0.406
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.