Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Swit_1737Hypothetical protein. (166 aa)    
Predicted Functional Partners:
Swit_1736
PFAM: aldo/keto reductase.
       0.773
Swit_1734
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
       0.664
Swit_1735
PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3.
       0.664
Swit_1733
Metal-dependent hydrolase-like protein.
       0.583
Swit_1738
PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3.
       0.572
Swit_0971
PFAM: Asp/Glu racemase.
 
     0.507
Swit_4294
PFAM: Asp/Glu racemase.
 
     0.504
Swit_3278
Hypothetical protein.
 
     0.445
Swit_1739
PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase.
       0.413
Swit_1740
PFAM: alpha/beta hydrolase fold.
       0.413
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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