STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_1740PFAM: alpha/beta hydrolase fold. (308 aa)    
Predicted Functional Partners:
Swit_1741
PFAM: Epoxide hydrolase domain protein.
 
     0.855
Swit_1739
PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase.
     
 0.789
Swit_1743
PFAM: cytochrome P450.
  
 
 0.722
Swit_1742
Hypothetical protein.
       0.703
Swit_1744
PFAM: alpha/beta hydrolase fold.
 
   
 0.649
Swit_1738
PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3.
       0.523
Swit_1746
PFAM: Enoyl-CoA hydratase/isomerase.
  
 
 0.465
Swit_2821
PFAM: Ankyrin.
  
 0.457
Swit_3098
PFAM: Ankyrin.
  
 0.457
Swit_0357
PFAM: alpha/beta hydrolase fold; Epoxide hydrolase domain protein.
 
     0.456
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.