STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_1759PFAM: ferredoxin. (106 aa)    
Predicted Functional Partners:
Swit_3235
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
 0.945
Swit_1757
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
  
  
 0.912
Swit_0898
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
 
 0.763
Swit_0002
NifU-like involved in Fe-S cluster formation.
  
 0.758
Swit_1758
PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein.
  
  
 0.754
Swit_1755
PFAM: short-chain dehydrogenase/reductase SDR.
  
 
 0.737
Swit_0052
PFAM: aminotransferase, class V.
 
 0.735
Swit_0051
Cysteine desulfurase; PFAM: aminotransferase, class V.
  
 0.691
Swit_1847
Cytochrome P450-like protein.
 
 0.686
Swit_1964
PFAM: cytochrome P450.
 
 0.682
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.