STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_1763PFAM: AMP-dependent synthetase and ligase. (512 aa)    
Predicted Functional Partners:
Swit_2070
PFAM: AMP-dependent synthetase and ligase.
  
  
 
0.711
Swit_3399
PFAM: AMP-dependent synthetase and ligase.
  
  
 
0.708
Swit_1530
PFAM: AMP-dependent synthetase and ligase.
  
  
 
0.706
Swit_3792
PFAM: AMP-dependent synthetase and ligase.
  
  
 
0.691
Swit_2949
PFAM: AMP-dependent synthetase and ligase.
 
 
0.688
Swit_1764
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.
  
  
 0.683
Swit_0282
PFAM: AMP-dependent synthetase and ligase.
  
  
 
0.652
Swit_1761
PFAM: AMP-dependent synthetase and ligase.
 
    
0.652
Swit_3069
PFAM: cytochrome P450.
 
 0.585
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
 0.530
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.