Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_1807PFAM: glycosyl transferase, group 1. (456 aa)    
Predicted Functional Partners:
Swit_1815
PFAM: glycosyl transferase, group 1.
 
     0.733
Swit_4514
Hypothetical protein.
 
  
 0.696
Swit_4739
Hypothetical protein.
 
  
 0.695
Swit_1805
Hypothetical protein.
 
  
 0.687
Swit_1806
Hypothetical protein.
 
   
 0.660
Swit_2648
PFAM: glycosyl transferase, group 1.
  
     0.653
Swit_2493
PFAM: polysaccharide biosynthesis protein.
 
  
 0.633
Swit_1202
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility C-terminal domain.
 
  
 0.561
Swit_0689
Hypothetical protein.
  
   
 0.549
Swit_4534
PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase-like.
 
  
 0.521
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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