Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swit_1865PFAM: GCN5-related N-acetyltransferase. (175 aa)    
Predicted Functional Partners:
Swit_1866
PFAM: aryldialkylphosphatase; Belongs to the metallo-dependent hydrolases superfamily. Phosphotriesterase family.
       0.781
Swit_1867
PFAM: amidohydrolase; Amidohydrolase 3.
       0.781
Swit_1868
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
     
 0.665
Swit_1863
PFAM: General substrate transporter; major facilitator superfamily MFS_1.
     
 0.582
Swit_1864
TIGRFAM: diaminopropionate ammonia-lyase; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit.
       0.572
rnc
RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
 
    0.526
Swit_3799
Hypothetical protein.
 
     0.469
Swit_1934
Hypothetical protein.
  
     0.455
Swit_1869
Hypothetical protein.
  
    0.435
Swit_1080
Hypothetical protein.
 
     0.418
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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