Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_1869Hypothetical protein. (341 aa)    
Predicted Functional Partners:
Swit_0323
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.
  
 0.553
Swit_1870
PFAM: regulatory protein, AsnC/Lrp family.
  
    0.531
Swit_1871
Kinase-like protein.
       0.527
Swit_2821
PFAM: Ankyrin.
  
 0.505
Swit_3098
PFAM: Ankyrin.
  
 0.505
Swit_1526
PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; Belongs to the TPP enzyme family.
  
  
 0.502
Swit_1877
PFAM: short-chain dehydrogenase/reductase SDR; KR.
  
  0.497
Swit_1872
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
  
  
 0.457
Swit_0317
PFAM: acyl-CoA dehydrogenase domain protein.
   
 0.439
Swit_0318
PFAM: acyl-CoA dehydrogenase domain protein.
   
 0.439
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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