STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_1871Kinase-like protein. (255 aa)    
Predicted Functional Partners:
Swit_1872
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
  
 
 0.979
Swit_4583
Glyoxylate reductase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
  
 
 0.921
Swit_1642
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
  
 
 0.911
Swit_4685
TIGRFAM: D-3-phosphoglycerate dehydrogenase; PFAM: amino acid-binding ACT domain protein; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
     
 0.908
Swit_0382
PFAM: aldehyde dehydrogenase.
   
 
  0.900
Swit_1000
PFAM: aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 
  0.900
Swit_1545
PFAM: aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 
  0.900
Swit_1618
PFAM: aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 
  0.900
Swit_1723
PFAM: aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 
  0.900
Swit_1979
PFAM: aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 
  0.900
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.