Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_1879PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase. (494 aa)    
Predicted Functional Partners:
Swit_1880
Indolepyruvate ferredoxin oxidoreductase; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding.
 
 
 0.983
Swit_1881
PFAM: cyclase family protein.
 
     0.968
Swit_3237
PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding.
  
 
 0.857
Swit_1882
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR.
 
  
 0.804
Swit_4606
Hypothetical protein.
 
   
 0.778
Swit_3236
PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
  
 
 0.761
Swit_0819
Gentisate 1,2-dioxygenase; PFAM: Cupin 2, conserved barrel domain protein.
 
   
 0.690
Swit_0830
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR.
 
  
 0.688
Swit_4607
Acetyl-CoA acetyltransferase-like protein.
 
   
 0.688
Swit_0827
PFAM: NADH:flavin oxidoreductase/NADH oxidase; monooxygenase, FAD-binding.
 
   
 0.647
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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