Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swit_1885PFAM: General substrate transporter; major facilitator superfamily MFS_1. (450 aa)    
Predicted Functional Partners:
Swit_1884
PFAM: oxidoreductase domain protein.
  
  
 0.782
Swit_1883
TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase.
     
 0.759
Swit_4243
PFAM: General substrate transporter; major facilitator superfamily MFS_1.
 
   
 0.636
Swit_1886
PFAM: Mannitol dehydrogenase, C-terminal domain; Mannitol dehydrogenase rossman, N-terminal domain.
     
 0.581
Swit_2287
PFAM: General substrate transporter; major facilitator superfamily MFS_1.
  
     0.579
Swit_3033
PFAM: major facilitator superfamily MFS_1.
 
  
 0.572
Swit_1888
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein.
     
 0.564
uxaC
PFAM: Glucuronate isomerase.
       0.559
Swit_2735
PFAM: General substrate transporter; major facilitator superfamily MFS_1.
 
  
 0.435
Swit_1890
2-keto-3-deoxygluconate kinase; PFAM: PfkB domain protein.
     
 0.431
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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