STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_1908PFAM: Extracellular ligand-binding receptor. (403 aa)    
Predicted Functional Partners:
Swit_1909
PFAM: AMP-dependent synthetase and ligase.
     
 0.783
Swit_1907
Hypothetical protein.
       0.781
Swit_1906
PFAM: Enoyl-CoA hydratase/isomerase.
       0.770
Swit_4360
Hypothetical protein.
  
  
 0.770
Swit_1905
PFAM: protein of unknown function DUF1330.
       0.750
Swit_1703
PFAM: response regulator receiver; ANTAR domain protein.
  
 
 0.737
Swit_1910
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
       0.655
Swit_1904
Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+))., Phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; malic enzyme domain protein; malic enzyme, NAD-binding.
  
  
 0.526
Swit_1911
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type.
     
 0.446
Swit_1449
phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
  
 0.432
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.