Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swit_1909PFAM: AMP-dependent synthetase and ligase. (521 aa)    
Predicted Functional Partners:
Swit_1906
PFAM: Enoyl-CoA hydratase/isomerase.
  
 
 0.814
Swit_1907
Hypothetical protein.
  
 
 0.814
Swit_1908
PFAM: Extracellular ligand-binding receptor.
     
 0.783
Swit_1905
PFAM: protein of unknown function DUF1330.
       0.750
Swit_1910
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
       0.655
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
 0.519
Swit_1904
Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+))., Phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; malic enzyme domain protein; malic enzyme, NAD-binding.
     
 0.513
Swit_0038
PFAM: phosphoesterase, PA-phosphatase related.
    
 0.482
Swit_0829
TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase.
 
0.482
Swit_2405
PFAM: phosphoesterase, PA-phosphatase related.
    
 0.482
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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