Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_1930Conserved hypothetical protein. (173 aa)    
Predicted Functional Partners:
Swit_1929
Hypothetical protein.
 
     0.918
Swit_1931
PFAM: SmpA/OmlA domain protein.
       0.736
Swit_3881
PFAM: protein of unknown function DUF983.
  
     0.692
Swit_2850
TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta.
  
     0.622
Swit_3011
PFAM: protein of unknown function DUF218.
  
     0.608
Swit_3546
Hypothetical protein.
 
     0.603
Swit_0575
Uncharacterized protein.
  
     0.595
Swit_2675
PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein.
  
     0.577
Swit_2134
Hypothetical protein.
  
     0.565
Swit_3782
Hypothetical protein.
  
     0.558
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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