STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_1934Hypothetical protein. (509 aa)    
Predicted Functional Partners:
Swit_3799
Hypothetical protein.
  
     0.771
Swit_3662
Hypothetical protein.
  
     0.767
Swit_1804
PFAM: Endonuclease/exonuclease/phosphatase.
  
     0.760
Swit_0026
Hypothetical protein.
  
     0.757
Swit_1111
Hypothetical protein.
  
     0.754
Swit_0796
Hypothetical protein.
  
     0.741
Swit_0794
PFAM: Tetratricopeptide TPR_4.
  
     0.738
Swit_4074
Hypothetical protein.
  
     0.705
Swit_0689
Hypothetical protein.
  
     0.694
Swit_3983
PFAM: Antibiotic biosynthesis monooxygenase.
  
     0.689
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.